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Discussion - Fall 2002

Time: Monday 4-5pm
Location: 340B Haviland Hall
 

Web and print resources Class presentations

Monday, August 26th

Course description (pdf slides)

Labor Day - no class

Introduction to genome biology
See Lecture 1 for the Biocondutor Summer 2002 Short Course (pdf slides).

Introduction to genome biology, continued.

Class cancelled - two hour lecture on September, 30th

Basic lab techniques
Introduction to DNA microarray technologies
See Lectures 2 and 3 for the Biocondutor Summer 2002 Short Course (pdf slides).

Guest lecture by Dr. Mark Neff, UC Davis
A Biologist's Perspective on Interesting Problems Requiring Statistical Applications (pdf slides).

Pre-processing in DNA microarray experiments
See Lecture 4 for the Biocondutor Summer 2002 Short Course (pdf slides).

Sona R. Saha, MPH, School of Public Health, UC Berkeley
Development and Application of an Enteric Pathogens Microarray (pdf slides).

Class cancelled

Siew Leng (Melinda) Teng and Prasana Venkateswaran, Division of Biostatistics, UC Berkeley
Introduction to HMMs and their applications (pdf slides).

Veterans Day - no class

Hui Tang, Division of Biostatistics, UC Berkeley
Sequence alignment (pdf slides).

Jing Yi, Department of Statistics, UC Berkeley
Designing microarray experiments (pdf slides).

Sandra Sinisi and Kathryn Steiger, Division of Biostatistics, UC Berkeley
Biological databases (pdf slides, ppt slides).

Yue Wang and Zheng Yin, Division of Biostatistics, UC Berkeley
An introduction to recombination and linkage analysis (pdf slides, ppt slides).

Yan Wang, Division of Biostatistics, UC Berkeley
QTL mapping(pdf slides, ppt slides).

Young Shin Kim, Division of Epidemiology, UC Berkeley
Association studies (pdf slides, ppt slides).

Srikesh Arunajadai, Division of Biostatistics, UC Berkeley
Comparative Genomic Hybridization