Sandrine Dudoit

Sandrine Dudoit, PhD
Professor, Division of Biostatistics, School of Public Health, and Department of Statistics
Chair and Head Graduate Advisor, Graduate Group in Biostatistics
University of California, Berkeley

185 Li Ka Shing Center, #3370
Berkeley, CA 94720-3370
Tel: (510) 643-1108
Fax: (510) 643-5163
E-mail: sandrine@stat.berkeley.edu










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Research and Teaching Activities

My research and teaching activities concern the development and application of statistical methods and software for the analysis of biomedical and genomic data.

Statistical methodology. My methodological research interests regard high-dimensional inference and include exploratory data analysis (EDA), visualization, loss-based estimation with cross-validation (e.g., density estimation, regression, model selection), and multiple hypothesis testing.

Applications to biomedical and genomic research. Much of my methodological work is motivated by statistical inference questions arising in biological research and, in particular, the design and analysis of high-throughput microarray and sequencing gene expression experiments, e.g., mRNA-Seq for transcriptome analysis and genome annotation and ChIP-Seq for DNA-protein interaction profiling (e.g., transcription factor binding). My contributions include: exploratory data analysis, normalization and expression quantitation, differential expression analysis, class discovery, prediction, integration of biological annotation metadata (e.g., Gene Ontology (GO) annotation).

Statistical computing. I am also interested in statistical computing and, in particular, reproducible research. I am a founding core developer of the Bioconductor Project (http://www.bioconductor.org), an open-source and open-development software project for the analysis of biomedical and genomic data.


Curriculum Vitae and Biography

Curriculum Vitae: [PDF]

Biography: [PDF] [Word]


Affiliations

Graduate Group in Biostatistics, UC Berkeley
Graduate Group in Computational and Genomic Biology, UC Berkeley
Graduate Group in Computational and Data Science and Engineering (CDSE), UC Berkeley
Center for Computational Biology (CCB), UC Berkeley
California Institute for Quantitative Biosciences (QB3)
Berkeley Stem Cell Center
Center for Bioinformatics and Molecular Biostatistics (CBMB), UC San Francisco
Bioconductor Project