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0in 5.4pt'> <p class=MsoNormal><span style='font-size:10.0pt;mso-fareast-font-family: ‹[SO;mso-bidi-font-family:"Times New Roman"'><span style="mso-spacerun:yes"> </span><o:p></o:p></span></p> </td> </tr> <tr style='mso-yfti-irow:1;height:38.4pt'> <td width="99%" colspan=2 valign=top style='width:99.6%;padding:1.5pt 1.5pt 1.5pt 1.5pt; height:38.4pt'> <h1><i style='mso-bidi-font-style:normal'><span style='font-size:24.0pt'><span style="mso-spacerun:yes">  </span>Haiyan Huang, PhD <o:p></o:p></span></i></h1> </td> </tr> <tr style='mso-yfti-irow:2;height:85.5pt'> <td width="44%" valign=top style='width:44.08%;padding:1.5pt 1.5pt 1.5pt 1.5pt; height:85.5pt'> <p align=center style='margin-left:33.0pt;text-align:center'><o:p>&nbsp;</o:p></p> <p class=MsoNormal style='mso-pagination:none;mso-layout-grid-align:none; text-autospace:none'><span style='mso-no-proof:yes'><span style="mso-spacerun:yes">   </span></span><span style='font-family:Helvetica; mso-bidi-font-family:Helvetica;color:#453CCC;mso-no-proof:yes'><!--[if gte vml 1]><v:shapetype id="_x0000_t75" coordsize="21600,21600" o:spt="75" o:preferrelative="t" path="m@4@5l@4@11@9@11@9@5xe" filled="f" stroked="f"> <v:stroke joinstyle="miter"/> <v:formulas> <v:f eqn="if lineDrawn pixelLineWidth 0"/> <v:f eqn="sum @0 1 0"/> <v:f eqn="sum 0 0 @1"/> <v:f eqn="prod @2 1 2"/> <v:f eqn="prod @3 21600 pixelWidth"/> <v:f eqn="prod @3 21600 pixelHeight"/> <v:f eqn="sum @0 0 1"/> <v:f eqn="prod @6 1 2"/> <v:f eqn="prod @7 21600 pixelWidth"/> <v:f eqn="sum @8 21600 0"/> <v:f eqn="prod @7 21600 pixelHeight"/> <v:f eqn="sum @10 21600 0"/> </v:formulas> <v:path o:extrusionok="f" gradientshapeok="t" o:connecttype="rect"/> <o:lock v:ext="edit" aspectratio="t"/> </v:shapetype><v:shape id="Picture_x0020_3" o:spid="_x0000_i1025" type="#_x0000_t75" style='width:235pt;height:177pt;visibility:visible;mso-wrap-style:square'> <v:imagedata src="index_files/image001.jpg" o:title=""/> </v:shape><![endif]--><![if !vml]><img width=237 height=179 src="index_files/image002.png" v:shapes="Picture_x0020_3"><![endif]></span><span style='font-family:Helvetica;mso-bidi-font-family:Helvetica;color:#453CCC'><o:p></o:p></span></p> <p style='margin-left:33.0pt'><o:p>&nbsp;</o:p></p> <p><span style='font-size:13.0pt;color:maroon'><o:p>&nbsp;</o:p></span></p> </td> <td width="55%" valign=top style='width:55.3%;padding:0in 5.4pt 0in 5.4pt; height:85.5pt'> <p class=MsoNormal style='margin-left:12.55pt'><span style='font-family:"Palatino Linotype"; mso-bidi-font-family:"Times New Roman";color:maroon'>Associate Professor<br> Department of <a href="http://www.stat.berkeley.edu/">Statistics</a> <o:p></o:p></span></p> <p class=MsoNormal style='margin-left:12.55pt'><span style='font-family:"Palatino Linotype"; mso-bidi-font-family:"Times New Roman";color:maroon'>Interdepartmental Group in </span><span style='font-family:"Palatino Linotype";mso-bidi-font-family: "Times New Roman";color:blue'><a href="http://www.stat.berkeley.edu/biostat/">Biostatistics</a></span><span style='font-family:"Palatino Linotype";mso-bidi-font-family:"Times New Roman"; color:maroon'><o:p></o:p></span></p> <p class=MsoNormal style='margin-left:12.55pt'><span style='font-family:"Palatino Linotype"; mso-bidi-font-family:"Times New Roman";color:blue'><a href="http://ccb.berkeley.edu">Center for Computational Biology</a></span><span style='font-family:"Palatino Linotype";mso-bidi-font-family:"Times New Roman"; color:maroon'>, PhD Program Chair &amp; Head Graduate Advisor</span><span style='mso-bidi-font-family:"Times New Roman";color:maroon'><o:p></o:p></span></p> <p class=MsoNormal style='margin-left:12.55pt'><span style='font-family:"Palatino Linotype"; mso-bidi-font-family:"Times New Roman";color:maroon'>University of California, Berkeley<o:p></o:p></span></p> <p class=MsoNormal style='margin-left:12.55pt'><span style='font-family:"Palatino Linotype"; mso-bidi-font-family:"Times New Roman";color:maroon'>CA, 94720, USA<o:p></o:p></span></p> <p class=MsoNormal style='margin-left:12.55pt'><span style='mso-bidi-font-family: "Times New Roman";color:maroon'><o:p>&nbsp;</o:p></span></p> <p class=MsoNormal style='margin-left:12.55pt'><span lang=DA style='font-family:"Palatino Linotype";mso-bidi-font-family:"Times New Roman"; color:maroon;mso-ansi-language:DA'>Tel: (510)642-6433<o:p></o:p></span></p> <p class=MsoNormal style='margin-left:12.55pt'><span lang=DA style='font-family:"Palatino Linotype";mso-bidi-font-family:"Times New Roman"; color:maroon;mso-ansi-language:DA'>Fax: (510)642-7892<o:p></o:p></span></p> <p class=MsoNormal style='margin-left:12.55pt'><span class=SpellE><span lang=DA style='font-family:"Palatino Linotype";mso-bidi-font-family:"Times New Roman"; color:maroon;mso-ansi-language:DA'>Email</span></span><span lang=DA style='font-family:"Palatino Linotype";mso-bidi-font-family:"Times New Roman"; color:maroon;mso-ansi-language:DA'>:</span><b style='mso-bidi-font-weight: normal'><span lang=DA style='mso-bidi-font-family:"Times New Roman"; color:maroon;mso-ansi-language:DA'> </span></b><span class=SpellE><span lang=DA style='mso-bidi-font-family:"Times New Roman";color:maroon; mso-ansi-language:DA'>hhuang</span></span><span lang=DA style='mso-bidi-font-family: "Times New Roman";color:maroon;mso-ansi-language:DA'><o:p></o:p></span></p> <p class=MsoNormal style='margin-left:47.4pt'><span lang=DA style='mso-bidi-font-family: "Times New Roman";color:maroon;mso-ansi-language:DA'>AT stat DOT </span><span class=SpellE><span lang=DA style='mso-fareast-font-family:‹[SO;mso-bidi-font-family: "Times New Roman";color:maroon;mso-ansi-language:DA'>b</span><span lang=DA style='mso-bidi-font-family:"Times New Roman";color:maroon;mso-ansi-language: DA'>erkeley</span></span><span lang=DA style='mso-bidi-font-family:"Times New Roman"; color:maroon;mso-ansi-language:DA'> DOT <span class=SpellE>edu</span><o:p></o:p></span></p> <p class=MsoNormal><span lang=DA style='font-size:13.0pt;mso-bidi-font-family: "Times New Roman";color:maroon;mso-ansi-language:DA'><o:p>&nbsp;</o:p></span></p> </td> </tr> <tr style='mso-yfti-irow:3;height:5.65pt'> <td width="99%" colspan=2 style='width:99.6%;background:#CCCCFF;padding:0in 5.4pt 0in 5.4pt; height:5.65pt'> <table class=MsoTableGrid border=1 cellspacing=0 cellpadding=0 style='margin-left:29.1pt;border-collapse:collapse;border:none;mso-border-alt: solid windowtext .5pt;mso-yfti-tbllook:480;mso-padding-alt:0in 5.4pt 0in 5.4pt'> <tr style='mso-yfti-irow:0;mso-yfti-firstrow:yes;mso-yfti-lastrow:yes; height:6.75pt'> <td width=477 valign=top style='width:477.0pt;border:none;padding:0in 5.4pt 0in 5.4pt; height:6.75pt'> <p class=MsoNormal><span lang=DA style='font-size:10.0pt;mso-fareast-font-family: ‹[SO;mso-bidi-font-family:"Times New Roman";mso-ansi-language:DA'><o:p>&nbsp;</o:p></span></p> </td> </tr> </table> </td> </tr> <tr style='mso-yfti-irow:4;height:5.65pt'> <td width="99%" colspan=2 style='width:99.6%;background:#F3F3F3;padding:0in 5.4pt 0in 5.4pt; height:5.65pt'> <p><b style='mso-bidi-font-weight:normal'><span style='mso-fareast-font-family: ‹[SO'>[CV]<span style="mso-spacerun:yes">    </span>[Research]<o:p></o:p></span></b></p> </td> </tr> <tr style='mso-yfti-irow:5'> <td width="99%" colspan=2 valign=top style='width:99.6%;background:white; padding:0in 5.4pt 0in 5.4pt'> <p class=Achievement style='margin-right:-18.5pt;mso-para-margin-right:-1.54gd; mso-list:none;tab-stops:list 38.1pt'><i style='mso-bidi-font-style:normal'><span style='mso-fareast-font-family:‹[SO'><o:p>&nbsp;</o:p></span></i></p> </td> </tr> <tr style='mso-yfti-irow:6;mso-yfti-lastrow:yes'> <td width="99%" colspan=2 valign=top style='width:99.6%;background:white; padding:0in 5.4pt 0in 5.4pt'> <p class=MsoNormal><span style='mso-fareast-font-family:‹[SO;mso-bidi-font-family: "Times New Roman"'><o:p>&nbsp;</o:p></span></p> </td> </tr> </table> <h1>People<o:p></o:p></h1> <p style='margin-left:29.2pt'><o:p>&nbsp;</o:p></p> <p style='margin-left:31.5pt'><b style='mso-bidi-font-weight:normal'>Current Students &amp; Postdocs: <o:p></o:p></b></p> <p style='margin-left:49.5pt;text-indent:-.25in;mso-list:l1 level1 lfo2'><![if !supportLists]><span style='font-size:9.0pt;mso-bidi-font-size:5.5pt;font-family:Symbol;mso-fareast-font-family: Symbol;mso-bidi-font-family:Symbol'><span style='mso-list:Ignore'>·<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]><span class=SpellE>Funnan</span> Shi (PhD, Statistics)</p> <p style='margin-left:49.5pt;text-indent:-.25in;mso-list:l1 level1 lfo2'><![if !supportLists]><span style='font-size:9.0pt;mso-bidi-font-size:5.5pt;font-family:Symbol;mso-fareast-font-family: Symbol;mso-bidi-font-family:Symbol'><span style='mso-list:Ignore'>·<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]><span class=SpellE>Yuting</span> Ye (PhD, Biostatistics)</p> <p style='margin-left:49.5pt;text-indent:-.25in;mso-list:l1 level1 lfo2'><![if !supportLists]><span style='font-size:9.0pt;mso-bidi-font-size:5.5pt;font-family:Symbol;mso-fareast-font-family: Symbol;mso-bidi-font-family:Symbol'><span style='mso-list:Ignore'>·<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]>Courtney <span class=SpellE>Schiffman</span> (PhD, Biostatistics)</p> <p style='margin-left:49.5pt;text-indent:-.25in;mso-list:l1 level1 lfo2'><![if !supportLists]><span style='font-size:9.0pt;mso-bidi-font-size:5.5pt;font-family:Symbol;mso-fareast-font-family: Symbol;mso-bidi-font-family:Symbol'><span style='mso-list:Ignore'>·<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]>Yun Zhou (PhD, Biostatistics)</p> <p style='margin-left:49.5pt;text-indent:-.25in;mso-list:l1 level1 lfo2'><![if !supportLists]><span style='font-size:9.0pt;mso-bidi-font-size:5.5pt;font-family:Symbol;mso-fareast-font-family: Symbol;mso-bidi-font-family:Symbol'><span style='mso-list:Ignore'>·<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]>Dr. <span class=SpellE>Ke</span> Liu (Postdoc)</p> <p style='margin-left:49.5pt;text-indent:-.25in;mso-list:l1 level1 lfo2'><![if !supportLists]><span style='font-size:9.0pt;mso-bidi-font-size:5.5pt;font-family:Symbol;mso-fareast-font-family: Symbol;mso-bidi-font-family:Symbol'><span style='mso-list:Ignore'>·<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]>Tom Hu (Undergraduate, Statistics)</p> <p><b style='mso-bidi-font-weight:normal'><o:p>&nbsp;</o:p></b></p> <p style='margin-left:31.5pt'><b style='mso-bidi-font-weight:normal'>Former Graduate Students:<o:p></o:p></b></p> <p style='margin-left:49.5pt;text-indent:-.25in;mso-list:l1 level1 lfo2'><![if !supportLists]><span style='font-size:9.0pt;mso-bidi-font-size:5.5pt;font-family:Symbol;mso-fareast-font-family: Symbol;mso-bidi-font-family:Symbol'><span style='mso-list:Ignore'>·<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]><span class=SpellE>Siew-leng</span> Melinda <span class=SpellE>Teng</span>, PhD, 2007 Summer (<u>Thesis Title:</u><a name="_Toc163564212"></a><a name="_Toc163575803"></a><a name="_Toc165721795"><span style='mso-bookmark:_Toc163575803'><span style='mso-bookmark:_Toc163564212'> Statistical methods in integrative analysis of gene expression data</span></span></a> <a name="_Toc165721796"></a><a name="_Toc163564213"></a><a name="_Toc163575804"><span style='mso-bookmark: _Toc163564213'><span style='mso-bookmark:_Toc165721796'>with applications to biological pathway</span></span></a><span style='mso-bookmark:_Toc165721796'>s</span>; <u>Current Position</u>: Statistician, Genentech<span style='mso-fareast-font-family: ‹[SO'>,</span> Inc.)</p> <p style='margin-left:49.5pt;text-indent:-.25in;mso-list:l1 level1 lfo2'><![if !supportLists]><span style='font-size:9.0pt;mso-bidi-font-size:5.5pt;font-family:Symbol;mso-fareast-font-family: Symbol;mso-bidi-font-family:Symbol'><span style='mso-list:Ignore'>·<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]>Na <span class=SpellE>Xu</span><span style='mso-fareast-font-family:‹[SO'>, </span>PhD<span style='mso-fareast-font-family:‹[SO'>,</span> 2008<span style='mso-fareast-font-family: ‹[SO'> summer, </span>co-advised with Prof. Peter Bickel<span style='mso-fareast-font-family: ‹[SO'> </span>(<u>Thesis Title</u>: <span class=SpellE><span style='mso-fareast-font-family: ¼ÕŠ'>Transcriptome</span></span><span style='mso-fareast-font-family:¼ÕŠ'> Detection by Multiple RNA Tiling Array Analysis and</span> <span style='mso-fareast-font-family:¼ÕŠ'>Identifying Functional Conserved Non-coding Elements by Statistical</span> <span style='mso-fareast-font-family:¼ÕŠ'>Testing</span>; <u>Current Position</u>: Statistician<span style='mso-fareast-font-family:‹[SO'>,</span> Genentech<span style='mso-fareast-font-family:‹[SO'>,</span> Inc.)</p> <p style='margin-left:49.5pt;text-indent:-.25in;mso-list:l1 level1 lfo2'><![if !supportLists]><span style='font-size:9.0pt;mso-bidi-font-size:5.5pt;font-family:Symbol;mso-fareast-font-family: Symbol;mso-bidi-font-family:Symbol'><span style='mso-list:Ignore'>·<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]><span class=SpellE>Kyungpil</span> Kim, PhD, 2013 (<u>Thesis Title</u>: Application of Statistical Methods to Integrative Analysis of Genomic Data; <u>Current Position</u>: Postdoctoral Research Fellow, Children s Hospital Oakland Research Institute)</p> <p style='margin-left:49.5pt;text-indent:-.25in;mso-list:l1 level1 lfo2'><![if !supportLists]><span style='font-size:9.0pt;mso-bidi-font-size:5.5pt;font-family:Symbol;mso-fareast-font-family: Symbol;mso-bidi-font-family:Symbol'><span style='mso-list:Ignore'>·<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]>Daisy Yan Huang, PhD (<u>Thesis Title:</u> Overcoming the Small Sample Size Challenge in Differential Gene Expression Analysis Studies; <u>Current Position:</u> Lecturer, Princeton University)</p> <p style='margin-left:49.5pt;text-indent:-.25in;mso-list:l1 level1 lfo2'><![if !supportLists]><span style='font-size:9.0pt;mso-bidi-font-size:5.5pt;font-family:Symbol;mso-fareast-font-family: Symbol;mso-bidi-font-family:Symbol'><span style='mso-list:Ignore'>·<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]><span class=SpellE>Jingyi</span> Jessica Li, PhD, 2013, co-advised with Prof. Peter Bickel (<u>Thesis Title:</u> Statistical Methods for Analyzing High-throughput Biological Data; <u>Current Position:</u> Assistant Professor, Department of Statistics, UC Los Angeles)</p> <p style='margin-left:49.5pt;text-indent:-.25in;mso-list:l1 level1 lfo2'><![if !supportLists]><span style='font-size:9.0pt;mso-bidi-font-size:5.5pt;font-family:Symbol;mso-fareast-font-family: Symbol;mso-bidi-font-family:Symbol'><span style='mso-list:Ignore'>·<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]>Y.X. Rachel Wang, PhD, 2015, co-advised with Prof. Peter Bickel (<u>Thesis Title: </u>Problems in Network Modeling: Estimating Edges and Community Detection;<u> Current Position:</u> faculty member, School of Mathematics and Statistics, University of Sydney, Australia) <u><o:p></o:p></u></p> <p style='margin-left:49.5pt;text-indent:-.25in;mso-list:l1 level1 lfo2'><![if !supportLists]><span style='font-size:9.0pt;mso-bidi-font-size:5.5pt;font-family:Symbol;mso-fareast-font-family: Symbol;mso-bidi-font-family:Symbol'><span style='mso-list:Ignore'>·<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]>Christine Ho, PhD, 2016 Winter, co-advised with Prof. Elizabeth <span class=SpellE>Purdom</span> (<u>Thesis Title: </u>Statistical Modeling and Analysis for Biomedical Applications; <u>Current Position:</u> Data Scientist, Pandora)<u><o:p></o:p></u></p> <p style='margin-left:49.5pt'><o:p>&nbsp;</o:p></p> <p style='margin-left:31.5pt'><o:p>&nbsp;</o:p></p> <p style='margin-left:49.5pt;text-indent:-.25in;mso-list:l1 level1 lfo2'><![if !supportLists]><span style='font-size:9.0pt;mso-bidi-font-size:5.5pt;font-family:Symbol;mso-fareast-font-family: Symbol;mso-bidi-font-family:Symbol'><span style='mso-list:Ignore'>·<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]><span class=SpellE>Hua</span> Chen<span style='mso-fareast-font-family:‹[SO'>, </span>Master 2008 (<u>Thesis Title</u>: Bayesian Method for Multi-Loci Association Study of Human Disease; <u>Position right after graduation</u>: <span style='mso-fareast-font-family: ‹[SO'>R</span>esearch fellow<span style='mso-fareast-font-family:‹[SO'>,</span> Harvard University)</p> <p style='margin-left:49.5pt;text-indent:-.25in;mso-list:l1 level1 lfo2'><![if !supportLists]><span lang=SV style='font-size:9.0pt;mso-bidi-font-size:5.5pt;font-family:Symbol; mso-fareast-font-family:Symbol;mso-bidi-font-family:Symbol;mso-ansi-language: SV'><span style='mso-list:Ignore'>·<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]><span lang=SV style='mso-ansi-language:SV'>Ling <span class=SpellE>Meng</span></span><span lang=SV style='mso-fareast-font-family: ‹[SO;mso-ansi-language:SV'>, </span><span lang=SV style='mso-ansi-language:SV'>Master 2009 (<span class=SpellE><u>Thesis</u></span><u> <span class=SpellE>Title</span></u>: Learning <span class=SpellE>Algorithm</span> and <span class=SpellE>Model</span> <span class=SpellE>Selection</span> for Protein-Protein <span class=SpellE>Interaction</span> <span class=SpellE>Inference</span> in <span class=SpellE>Arabidopsis</span>; <u>Position right <span class=SpellE>after</span> <span class=SpellE>graduation</span></u>: Research <span class=SpellE>Fellow</span>, UC Berkeley)<o:p></o:p></span></p> <p style='margin-left:49.5pt;text-indent:-.25in;mso-list:l1 level1 lfo2'><![if !supportLists]><span style='font-size:9.0pt;mso-bidi-font-size:5.5pt;font-family:Symbol;mso-fareast-font-family: Symbol;mso-bidi-font-family:Symbol'><span style='mso-list:Ignore'>·<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]>Harold Pimentel, Master 2013 (<span class=SpellE><u><span lang=SV style='mso-ansi-language: SV'>Thesis</span></u></span><u><span lang=SV style='mso-ansi-language:SV'> <span class=SpellE>Title</span></span></u><span lang=SV style='mso-ansi-language: SV'>: </span><span class=SpellE>Biclustering</span> as an Extension of Sparse Canonical Correlation Analysis; <u>Current Position:</u> Postdoctoral Research Fellow, UCSF)</p> <p style='margin-left:49.5pt;text-indent:-.25in;mso-list:l1 level1 lfo2'><![if !supportLists]><span style='font-size:9.0pt;mso-bidi-font-size:5.5pt;font-family:Symbol;mso-fareast-font-family: Symbol;mso-bidi-font-family:Symbol'><span style='mso-list:Ignore'>·<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]>Courtney <span class=SpellE>Schiffman</span>, Master 2016 (<span class=SpellE><u><span lang=SV style='mso-ansi-language:SV'>Thesis</span></u></span><u><span lang=SV style='mso-ansi-language:SV'> <span class=SpellE>Title</span></span></u><span lang=SV style='mso-ansi-language:SV'>: </span>Single Cell RNA-<span class=SpellE>Seq</span> Study: A Study on Normalization and Sub-Population Identification Techniques; <u>Current Position:</u> Student in Biostatistics PhD Program, UC Berkeley)</p> <p style='margin-left:49.5pt;text-indent:-.25in;mso-list:l1 level1 lfo2'><![if !supportLists]><span style='font-size:9.0pt;mso-bidi-font-size:5.5pt;font-family:Symbol;mso-fareast-font-family: Symbol;mso-bidi-font-family:Symbol'><span style='mso-list:Ignore'>·<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]><span class=SpellE>Yuting</span> Ye, Master 2017 (<span class=SpellE><u><span lang=SV style='mso-ansi-language:SV'>Thesis</span></u></span><u><span lang=SV style='mso-ansi-language:SV'> <span class=SpellE>Title</span></span></u><span lang=SV style='mso-ansi-language:SV'>: </span>Testing and Diagnosis of Neurological Disorders based on Neuroimaging; <u>Current Position:</u> Student in Biostatistics PhD Program, UC Berkeley)</p> <p><span lang=SV style='mso-ansi-language:SV'><o:p>&nbsp;</o:p></span></p> <p style='margin-left:31.5pt'><span lang=SV style='mso-ansi-language:SV'><o:p>&nbsp;</o:p></span></p> <p style='margin-left:31.5pt'><b style='mso-bidi-font-weight:normal'>Former Postdocs:<o:p></o:p></b></p> <p style='margin-left:49.5pt;text-indent:-.25in;mso-list:l1 level1 lfo2'><![if !supportLists]><span lang=FR style='font-size:9.0pt;mso-bidi-font-size:5.5pt;font-family:Symbol; mso-fareast-font-family:Symbol;mso-bidi-font-family:Symbol;mso-ansi-language: FR'><span style='mso-list:Ignore'>·<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]><span lang=FR style='mso-fareast-font-family: ‹[SO;mso-ansi-language:FR'>Ci-<span class=SpellE>Ren</span> Jiang, <span class=SpellE>Postdoc</span> Sept 2009  <span class=SpellE>Aug</span> 2010 (<span class=SpellE><u>Current</u></span><u> Position</u>: (<span class=SpellE>Tenured</span>) <span class=SpellE>Associate</span> <span class=SpellE>Research</span> <span class=SpellE>Fellow</span> of the Institute of <span class=SpellE>Physics</span>, <span class=SpellE>Academia</span> <span class=SpellE>Sinica</span>, Taipei, Taiwan)<span style="mso-spacerun:yes">  </span></span><span lang=FR style='mso-ansi-language:FR'><o:p></o:p></span></p> <p style='margin-left:49.5pt;text-indent:-.25in;mso-list:l1 level1 lfo2'><![if !supportLists]><span style='font-size:9.0pt;mso-bidi-font-size:5.5pt;font-family:Symbol;mso-fareast-font-family: Symbol;mso-bidi-font-family:Symbol'><span style='mso-list:Ignore'>·<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]><span class=SpellE><span style='mso-fareast-font-family:‹[SO'>Qunhua</span></span><span style='mso-fareast-font-family:‹[SO'> Li, Postdoc Sept 2008  July 2011, </span>co-advised with Professor Peter Bickel (<u>Current Position</u>: <span style='mso-fareast-font-family: ‹[SO'>Assistant Professor, Department of Statistics, Penn State University</span>)</p> <p style='margin-left:49.5pt;text-indent:-.25in;mso-list:l1 level1 lfo2'><![if !supportLists]><span style='font-size:9.0pt;mso-bidi-font-size:5.5pt;font-family:Symbol;mso-fareast-font-family: Symbol;mso-bidi-font-family:Symbol'><span style='mso-list:Ignore'>·<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]><span class=SpellE>Hao</span> <span class=SpellE>Xiong</span>, Postdoc Jan 2012  Dec 2012, co-advised with Professor Peter Bickel</p> <p style='margin-left:49.5pt;text-indent:-.25in'><span style='mso-fareast-font-family: ‹[SO'><o:p>&nbsp;</o:p></span></p> <p style='margin-left:49.5pt;text-indent:-.25in'><span style='mso-fareast-font-family: ‹[SO'><o:p>&nbsp;</o:p></span></p> <p style='margin-left:31.5pt'><b style='mso-bidi-font-weight:normal'>Major Collaborators:<o:p></o:p></b></p> <p style='margin-left:49.5pt;text-indent:-.25in;mso-list:l1 level1 lfo2'><![if !supportLists]><span style='font-size:9.0pt;mso-bidi-font-size:5.5pt;font-family:Symbol;mso-fareast-font-family: Symbol;mso-bidi-font-family:Symbol'><span style='mso-list:Ignore'>·<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]>Peter Bickel, Statistics Department, UC Berkeley</p> <p style='margin-left:49.5pt;text-indent:-.25in;mso-list:l1 level1 lfo2'><![if !supportLists]><span style='font-size:9.0pt;mso-bidi-font-size:5.5pt;font-family:Symbol;mso-fareast-font-family: Symbol;mso-bidi-font-family:Symbol'><span style='mso-list:Ignore'>·<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]>Marisa Medina, Children s Hospital Oakland Research Institute</p> <p style='margin-left:49.5pt;text-indent:-.25in;mso-list:l1 level1 lfo2'><![if !supportLists]><span style='font-size:9.0pt;mso-bidi-font-size:5.5pt;font-family:Symbol;mso-fareast-font-family: Symbol;mso-bidi-font-family:Symbol'><span style='mso-list:Ignore'>·<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]>Lewis Feldman, Plant <span style='mso-fareast-font-family:‹[SO'>&amp; </span>M<span style='mso-fareast-font-family:‹[SO'>icrobial</span> Biology, UC Berkeley </p> <p style='margin-left:49.5pt;text-indent:-.25in;mso-list:l1 level1 lfo2'><![if !supportLists]><span lang=ES style='font-size:9.0pt;mso-bidi-font-size:5.5pt;font-family:Symbol; mso-fareast-font-family:Symbol;mso-bidi-font-family:Symbol;mso-ansi-language: ES'><span style='mso-list:Ignore'>·<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]>Lydia <span class=SpellE>Sohn</span>, Mechanical Engineering, UC Berkeley<span lang=ES style='mso-ansi-language:ES'><o:p></o:p></span></p> <p style='margin-left:49.5pt;text-indent:-.25in;mso-list:l1 level1 lfo2'><![if !supportLists]><span lang=ES style='font-size:9.0pt;mso-bidi-font-size:5.5pt;font-family:Symbol; mso-fareast-font-family:Symbol;mso-bidi-font-family:Symbol;mso-ansi-language: ES'><span style='mso-list:Ignore'>·<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]>Amy Herr, Bioengineering, UC Berkeley<span lang=ES style='mso-ansi-language:ES'><o:p></o:p></span></p> <h1 style='margin-left:.75in;text-indent:-22.5pt'><o:p>&nbsp;</o:p></h1> <h1>Teaching</h1> <p class=MsoNormal><span style='mso-fareast-font-family:‹[SO;mso-bidi-font-family: "Times New Roman"'><o:p>&nbsp;</o:p></span></p> <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span style='mso-bidi-font-family:"Times New Roman"'><span style='mso-tab-count:1'>            </span>Undergraduate courses:</span></b><b style='mso-bidi-font-weight:normal'><span style='mso-fareast-font-family:‹[SO;mso-bidi-font-family:"Times New Roman"'><o:p></o:p></span></b></p> <p class=MsoNormal style='margin-left:45.0pt'><span style='mso-bidi-font-family: "Times New Roman"'><span style='mso-tab-count:1'>         </span>STAT 152: Survey Sampling</span><span style='mso-fareast-font-family:‹[SO;mso-bidi-font-family: "Times New Roman"'> (</span><span style='mso-bidi-font-family:"Times New Roman"'>Falls 2003  2006</span><span style='mso-fareast-font-family:‹[SO;mso-bidi-font-family: "Times New Roman"'>)<b style='mso-bidi-font-weight:normal'><o:p></o:p></b></span></p> <p class=MsoNormal style='margin-left:45.0pt'><span style='mso-bidi-font-family: "Times New Roman"'><span style='mso-tab-count:1'>         </span>BIOE/STAT C141: Statistics for Bioinformatics</span><span style='mso-fareast-font-family: ‹[SO;mso-bidi-font-family:"Times New Roman"'> (</span><span style='mso-bidi-font-family: "Times New Roman"'>Springs 2004  2008)</span><b style='mso-bidi-font-weight: normal'><span style='mso-fareast-font-family:‹[SO;mso-bidi-font-family:"Times New Roman"'><o:p></o:p></span></b></p> <p class=MsoNormal style='margin-left:45.0pt'><span style='mso-bidi-font-family: "Times New Roman"'><span style='mso-tab-count:1'>         </span>STAT 131A: Statistical Inferences for Social and Life Scientists</span><span style='mso-fareast-font-family:‹[SO;mso-bidi-font-family:"Times New Roman"'> (</span><span style='mso-bidi-font-family:"Times New Roman"'>Spring 2009</span><span style='mso-fareast-font-family:‹[SO;mso-bidi-font-family:"Times New Roman"'>)<o:p></o:p></span></p> <p class=MsoNormal style='margin-left:45.0pt'><span style='mso-fareast-font-family: ‹[SO;mso-bidi-font-family:"Times New Roman"'><span style='mso-tab-count:1'>         </span>STAT 157: </span><span style='mso-bidi-font-family:"Times New Roman"'>Seminar on Topics in Probability and Statistics</span><span style='mso-fareast-font-family: ‹[SO;mso-bidi-font-family:"Times New Roman"'> (Fall </span><span style='mso-bidi-font-family:"Times New Roman"'>2009</span><span style='mso-fareast-font-family:‹[SO;mso-bidi-font-family:"Times New Roman"'>)<o:p></o:p></span></p> <p class=MsoNormal style='margin-left:45.0pt'><span style='mso-fareast-font-family: ‹[SO;mso-bidi-font-family:"Times New Roman"'><span style='mso-tab-count:1'>         </span>STAT 133: Concepts in Computing with Data (Spring 2013)<o:p></o:p></span></p> <p class=MsoNormal style='margin-left:26.5pt;mso-para-margin-left:1.96gd; text-indent:-3.0pt;mso-char-indent-count:-1.0'><span style='font-size:3.0pt; mso-bidi-font-family:"Times New Roman"'><o:p>&nbsp;</o:p></span></p> <p class=MsoNormal style='margin-left:26.9pt;mso-para-margin-left:2.24gd'><b style='mso-bidi-font-weight:normal'><span style='mso-bidi-font-family:"Times New Roman"'><span style='mso-tab-count:1'>   </span>Master courses:<o:p></o:p></span></b></p> <p class=MsoNormal style='margin-left:46.2pt;mso-para-margin-left:3.85gd'><span style='mso-bidi-font-family:"Times New Roman"'><span style='mso-tab-count:1'>         </span>STAT 200B: Introduction to Probability and Statistics at an Advanced Level</span><span style='mso-fareast-font-family:‹[SO;mso-bidi-font-family:"Times New Roman"'> (</span><span style='mso-bidi-font-family:"Times New Roman"'>Springs 2006, 2007, 2011, 2012</span><span style='mso-fareast-font-family:‹[SO;mso-bidi-font-family:"Times New Roman"'>)<o:p></o:p></span></p> <p class=MsoNormal style='margin-left:46.2pt;mso-para-margin-left:3.85gd; text-indent:25.8pt'><span style='mso-bidi-font-family:"Times New Roman"'>STAT 201B: Introduction to Probability and Statistics at an Advanced Level</span><span style='mso-fareast-font-family:‹[SO;mso-bidi-font-family:"Times New Roman"'> (</span><span style='mso-bidi-font-family:"Times New Roman"'>Falls 2013, 2014, 2016, 2017</span><span style='mso-fareast-font-family:‹[SO;mso-bidi-font-family:"Times New Roman"'>)<o:p></o:p></span></p> <p class=MsoNormal style='margin-left:26.5pt;mso-para-margin-left:1.96gd; text-indent:-3.0pt;mso-char-indent-count:-1.0'><span style='font-size:3.0pt; mso-bidi-font-family:"Times New Roman"'><o:p>&nbsp;</o:p></span></p> <p class=MsoNormal style='margin-left:26.9pt;mso-para-margin-left:2.24gd'><b style='mso-bidi-font-weight:normal'><span style='mso-bidi-font-family:"Times New Roman"'><span style='mso-tab-count:1'>   </span>PhD courses:<o:p></o:p></span></b></p> <p class=MsoNormal style='margin-left:26.9pt;mso-para-margin-left:2.24gd'><b style='mso-bidi-font-weight:normal'><span style='mso-bidi-font-family:"Times New Roman"'><span style='mso-tab-count:2'>               </span></span></b><span style='mso-bidi-font-family:"Times New Roman"'>STAT 215A: Statistical Models: Theory and Application </span><span style='mso-fareast-font-family:‹[SO; mso-bidi-font-family:"Times New Roman"'>(</span><span style='mso-bidi-font-family: "Times New Roman"'>Fall 2011</span><span style='mso-fareast-font-family:‹[SO; mso-bidi-font-family:"Times New Roman"'>)</span><b style='mso-bidi-font-weight: normal'><span style='mso-bidi-font-family:"Times New Roman"'><o:p></o:p></span></b></p> <p class=MsoNormal style='margin-left:26.9pt;mso-para-margin-left:2.24gd'><b style='mso-bidi-font-weight:normal'><span style='mso-bidi-font-family:"Times New Roman"'><span style='mso-tab-count:2'>               </span></span></b><span style='mso-bidi-font-family:"Times New Roman"'>STAT 215B: Statistical Models: Theory and Application (Spring 2017)<o:p></o:p></span></p> <p class=MsoNormal style='margin-left:62.75pt;mso-para-margin-left:5.23gd; text-indent:9.1pt'><span style='mso-bidi-font-family:"Times New Roman"'>STAT 210A: Theoretical Statistics </span><span style='mso-fareast-font-family:‹[SO; mso-bidi-font-family:"Times New Roman"'>(</span><span style='mso-bidi-font-family: "Times New Roman"'>Falls 2008</span><span style='mso-fareast-font-family:‹[SO; mso-bidi-font-family:"Times New Roman"'>  2010)</span><b style='mso-bidi-font-weight: normal'><span style='mso-bidi-font-family:"Times New Roman"'><o:p></o:p></span></b></p> <p class=MsoNormal style='margin-left:26.9pt;mso-para-margin-left:2.24gd'><span style='mso-bidi-font-family:"Times New Roman"'><span style='mso-tab-count:2'>               </span>STAT 246: Statistical Genetics</span><span style='mso-fareast-font-family:‹[SO; mso-bidi-font-family:"Times New Roman"'> </span><span style='mso-bidi-font-family: "Times New Roman"'>(Spring 2009; co-teaching with Prof. S <span class=SpellE>Dudoit</span>)<b style='mso-bidi-font-weight:normal'><o:p></o:p></b></span></p> <p class=MsoNormal style='margin-left:26.9pt;mso-para-margin-left:2.24gd'><b style='mso-bidi-font-weight:normal'><span style='mso-bidi-font-family:"Times New Roman"'><span style='mso-tab-count:1'>   </span></span></b><span style='mso-bidi-font-family: "Times New Roman"'><span style='mso-tab-count:1'>            </span>STAT C245E/F: Statistical Genomics (Springs 2010, 2012, 2013, 2014; co-teaching with Prof. S <span class=SpellE>Dudoit</span> and Prof. R Nielson)<o:p></o:p></span></p> <p class=MsoNormal style='margin-left:46.2pt;mso-para-margin-left:3.85gd'><span style='mso-bidi-font-family:"Times New Roman"'><span style='mso-tab-count:1'>         </span>STAT 272: Statistical Consulting (Fall 2010, Spring 2014, Fall 2014, Spring 2015, Spring 2016)<o:p></o:p></span></p> <p class=MsoNormal style='margin-left:46.2pt;mso-para-margin-left:3.85gd'><span style='font-size:3.0pt;mso-bidi-font-size:12.0pt;mso-bidi-font-family:"Times New Roman"'><o:p>&nbsp;</o:p></span></p> <p class=MsoNormal style='margin-left:26.9pt;mso-para-margin-left:2.24gd; text-indent:9.1pt'><b style='mso-bidi-font-weight:normal'><span style='mso-bidi-font-family:"Times New Roman"'>Pedagogical course:<u><o:p></o:p></u></span></b></p> <p class=MsoNormal style='margin-left:62.75pt;mso-para-margin-left:5.23gd; text-indent:9.1pt'><span style='mso-bidi-font-family:"Times New Roman"'>STAT 375: Professional Preparation: Teaching of Probability and Statistics (Falls 2013, 2014)<o:p></o:p></span></p> <p class=MsoNormal style='margin-left:46.2pt;mso-para-margin-left:3.85gd'><span style='mso-bidi-font-family:"Times New Roman"'><span style="mso-spacerun:yes"> </span></span><span style='mso-fareast-font-family: ‹[SO;mso-bidi-font-family:"Times New Roman"'><o:p></o:p></span></p> <h1><o:p>&nbsp;</o:p></h1> <h1>Publications</h1> <p class=MsoNormal><span style='mso-fareast-font-family:‹[SO;mso-bidi-font-family: "Times New Roman"'><o:p>&nbsp;</o:p></span></p> <p class=MsoNormal><span style='mso-fareast-font-family:‹[SO;mso-bidi-font-family: "Times New Roman"'>* Corresponding or Co-corresponding author(s) <o:p></o:p></span></p> <p class=MsoNormal><span style='mso-fareast-font-family:‹[SO;mso-bidi-font-family: "Times New Roman"'><o:p>&nbsp;</o:p></span></p> <p class=MsoNormal style='margin-left:.5in;text-indent:-.25in;mso-list:l2 level1 lfo3; tab-stops:list 14.6pt .5in'><![if !supportLists]><span style='mso-bidi-font-family: "Times New Roman"'><span style='mso-list:Ignore'>1.<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]>Jiang H, <span class=SpellE>Sohn</span> L, Huang H*, Chen L* (2018). Single Cell Clustering Based on Cell-Pair Differentiability Correlation and Variance Analysis. <b style='mso-bidi-font-weight:normal'>Bioinformatics</b>. 2018 May 16<span class=GramE>;1:11</span>.</p> <p class=MsoNormal style='margin-left:.5in;text-indent:-.25in;mso-list:l2 level1 lfo3; tab-stops:list 14.6pt .5in'><![if !supportLists]><span style='mso-bidi-font-family: "Times New Roman";mso-bidi-font-weight:bold'><span style='mso-list:Ignore'>2.<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]><span style='mso-bidi-font-weight:bold'>Kang CC, Ward TM, <span class=SpellE>Bockhorn</span> J, <span class=SpellE>Schiffman</span> C, Huang H, <span class=SpellE>Pegram</span> MD, Herr AE (2018). Electrophoretic cytopathology resolves ERBB2 forms with single-cell resolution. <b>NPJ precision oncology</b>. 2018 Mar 22<span class=GramE>;2</span>(1):10.<o:p></o:p></span></p> <p class=MsoNormal style='margin-left:.5in;text-indent:-.25in;mso-list:l2 level1 lfo3; tab-stops:list 14.6pt .5in'><![if !supportLists]><span style='mso-bidi-font-family: "Times New Roman";mso-bidi-font-weight:bold'><span style='mso-list:Ignore'>3.<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]><span style='mso-bidi-font-weight:bold'>Lin JM, Kang CC, Zhou Y, Huang H, Herr AE, Kumar S (2018). Linking invasive motility to protein expression in single tumor cells. <b>Lab on a Chip.</b> 2018<span class=GramE>;18</span>(2):371-84.<o:p></o:p></span></p> <p class=MsoNormal style='margin-left:.5in;text-indent:-.25in;mso-list:l2 level1 lfo3; tab-stops:list 14.6pt .5in'><![if !supportLists]><span style='mso-bidi-font-family: "Times New Roman";mso-bidi-font-weight:bold'><span style='mso-list:Ignore'>4.<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]>Pimentel H, Hu ZT, Huang H* (2018). <span class=SpellE><span style='mso-bidi-font-weight: bold'>Biclustering</span></span><span style='mso-bidi-font-weight:bold'> by Sparse Canonical Correlation Analysis. <b>Quantitative Biology</b>. 2018 Mar 1<span class=GramE>;6</span>(1):56-67.<o:p></o:p></span></p> <p class=MsoNormal style='margin-left:.5in;text-indent:-.25in;mso-list:l2 level1 lfo3; tab-stops:list 14.6pt .5in'><![if !supportLists]><span style='mso-bidi-font-family: "Times New Roman"'><span style='mso-list:Ignore'>5.<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]>Wang YXR, Liu K, <span class=SpellE>Theusch</span> E, Rotter JI, Medina MW, Waterman M*, Huang H* (2017). Generalized correlation measure using count statistics for gene expression data with ordered samples. <b style='mso-bidi-font-weight:normal'>Bioinformatics.</b><span style="mso-spacerun:yes">  </span>2017 Oct 12<span class=GramE>;34</span>(4):617-24.</p> <p class=MsoNormal style='margin-left:.5in;text-indent:-.25in;mso-list:l2 level1 lfo3; tab-stops:list 14.6pt .5in'><![if !supportLists]><span style='mso-bidi-font-family: "Times New Roman"'><span style='mso-list:Ignore'>6.<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]>Huang H*, Yu B* (2017). Data wisdom in computational genomics research. <b style='mso-bidi-font-weight:normal'>Statistics in Biosciences</b>. 2017; 9(2)<span class=GramE>:646</span>-61.</p> <p class=MsoNormal style='margin-left:.5in;text-indent:-.25in;mso-list:l2 level1 lfo3; tab-stops:list 14.6pt .5in'><![if !supportLists]><span style='mso-bidi-font-family: "Times New Roman"'><span style='mso-list:Ignore'>7.<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]>Chang M, <span class=SpellE>Womer</span> FY, <span class=SpellE>Edmiston</span> KE, <span class=SpellE>Bai</span> C, Zhou Q, Jiang X, Wei S, Wei Y, Ye Y, Huang H, He Y, <span class=SpellE>Xu</span> K, Tang Y, Wang F (2017). Neurobiological Commonalities and Distinctions Among Three Major Psychiatric Diagnostic Categories: A Structural MRI Study. <b style='mso-bidi-font-weight: normal'>Schizophrenia Bulletin.</b> 2017 Jun 13.</p> <p class=MsoNormal style='margin-left:.5in;text-indent:-.25in;mso-list:l2 level1 lfo3; tab-stops:list 14.6pt .5in'><![if !supportLists]><span style='mso-bidi-font-family: "Times New Roman";mso-bidi-font-weight:bold'><span style='mso-list:Ignore'>8.<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]>Shi F, Huang H* (2017). Identifying Cell Subpopulations and Their Genetic Drivers from Single-Cell RNA-<span class=SpellE>Seq</span> Data Using a <span class=SpellE>Biclustering</span> Approach. <b style='mso-bidi-font-weight:normal'>Journal of Computational Biology.</b> 2017 Jul 1<span class=GramE>;24</span>(7):663-74.<span style="mso-spacerun:yes">                             </span><span style="mso-spacerun:yes">                 </span><span style='mso-bidi-font-weight: bold'><o:p></o:p></span></p> <p class=MsoNormal style='margin-left:.5in;text-indent:-.25in;mso-list:l2 level1 lfo3; tab-stops:list 14.6pt .5in'><![if !supportLists]><span style='mso-bidi-font-family: "Times New Roman";mso-bidi-font-weight:bold'><span style='mso-list:Ignore'>9.<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]><span class=SpellE><span style='mso-bidi-font-weight:bold'>Schiffman</span></span><span style='mso-bidi-font-weight:bold'> C, Lin C, Shi F, Chen L, <span class=SpellE>Sohn</span> L, Huang H* (2017). <span class=SpellE>SIDEseq</span>: A Cell Similarity Measure Defined by Shared Identified Differentially Expressed Genes for Single-cell RNA Sequencing data. <b>Statistics in Biosciences.</b> June 2017, Volume 9, Issue&nbsp;1, <span class=SpellE>pp</span> 200 216.<span style="mso-spacerun:yes">      </span><o:p></o:p></span></p> <p class=MsoNormal style='margin-left:.5in;text-indent:-.25in;mso-list:l2 level1 lfo3; tab-stops:list 14.6pt .5in'><![if !supportLists]><span style='mso-bidi-font-family: "Times New Roman";mso-bidi-font-weight:bold'><span style='mso-list:Ignore'>10.<span style='font:7.0pt "Times New Roman"'>&nbsp; </span></span></span><![endif]><span class=SpellE><span style='mso-bidi-font-weight:bold'>Sinkala</span></span><span style='mso-bidi-font-weight:bold'> E, <span class=SpellE>Sollier</span>-Christen E, <span class=SpellE>Renier</span> C, <span class=SpellE>Rosąs-Canyelles</span> E, <span class=SpellE>Che</span> J, <span class=SpellE>Heirich</span> K, <span class=SpellE>Duncombe</span> TA, <span class=SpellE>Vlassakis</span> J, Yamauchi KA, Huang H, Jeffrey SS, Herr AE (2017). Profiling protein expression in circulating <span class=SpellE>tumour</span> cells using microfluidic western blotting. <b>Nature Communications</b>, Mar 23<span class=GramE>;8:14622</span>. <o:p></o:p></span></p> <ol style='margin-top:0in' start=11 type=1> <li class=MsoNormal style='mso-list:l2 level1 lfo3;tab-stops:list .5in'>Wang YXR, Jiang K, Feldman LJ, Bickel PJ, Huang H* (2015).<span style='font-size:11.0pt;mso-bidi-font-family:"Times New Roman"'> </span>Inferring Gene-Gene Interactions and Functional Modules Using Sparse Canonical Correlation Analysis. <b style='mso-bidi-font-weight:normal'>Annals of Applied Statistics. </b>9(1): 300-323. <b style='mso-bidi-font-weight: normal'><o:p></o:p></b></li> </ol> <p class=MsoNormal style='margin-left:.5in;text-indent:-.25in;mso-list:l2 level1 lfo3; tab-stops:list 14.6pt .5in'><![if !supportLists]><span style='mso-bidi-font-family: "Times New Roman"'><span style='mso-list:Ignore'>12.<span style='font:7.0pt "Times New Roman"'>&nbsp; </span></span></span><![endif]>National Research Council Committee on Predictive-Toxicology Approaches for Military Assessments of Acute Exposures (2015).  <b style='mso-bidi-font-weight:normal'>National Academy of Sciences: Application of Modern Toxicology Approaches for Predicting Acute Toxicity for Chemical Defense</b>. Washington, DC: The National Academies Press. (I served as an NRC Committee member)</p> <ol style='margin-top:0in' start=13 type=1> <li class=MsoNormal style='mso-list:l2 level1 lfo3;tab-stops:list .5in'>Wang YXR, Waterman MS*, Huang H* (2014). <span style='mso-bidi-font-weight: bold'>Gene <span class=SpellE>Coexpression</span> Measures in Large Heterogeneous Samples Using Count Statistics. </span><span class=SpellE><b style='mso-bidi-font-weight:normal'>Proc</b></span><b style='mso-bidi-font-weight: normal'> <span class=SpellE>Natl</span> <span class=SpellE>Acad</span> Sci. USA</b>. <span style='mso-bidi-font-weight:bold'>111(46)<span class=GramE>:16371</span>-6 [<a href="http://www.pnas.org/content/111/46/16371.full.pdf+html?sid=d4671b31-08e0-4951-8ffd-e6e77727dcfb">Paper Link</a>] Commentary [<a href="http://www.pnas.org/content/111/46/16236.short">Link</a>]</span></li> <li class=MsoNormal style='mso-list:l2 level1 lfo3;tab-stops:list .5in'>Kim K, <span class=SpellE>Bolotin</span> E, <span class=SpellE>Theusch</span> E, Huang H, Medina MW, Krauss RM (2014). Prediction of LDL Cholesterol Response to Statin using <span class=SpellE>Transcriptomic</span> and Genetic Variation. <b style='mso-bidi-font-weight:normal'>Genome Biology.</b> 15(9): 460. [<a href="http://genomebiology.com/2014/15/9/460">Paper Link</a>]</li> <li class=MsoNormal style='mso-list:l2 level1 lfo3;tab-stops:list .5in'>Li JJ, Huang H*, Bickel PJ*, Brenner S* (2014). Comparison of D. Melanogaster and C. <span class=SpellE>Elegans</span> Developmental Stages, Tissues, and Cells by <span class=SpellE>modENCODE</span> RNA-<span class=SpellE>seq</span> Data.<span style="mso-spacerun:yes">  </span><b style='mso-bidi-font-weight: normal'>Genome Research. </b>24: 1084-1101. [<a href="http://genome.cshlp.org/content/24/7/1086.abstract">Paper Link</a>]</li> <li class=MsoNormal style='mso-list:l2 level1 lfo3;tab-stops:list .5in'>Jiang CR, Liu CC, Zhou XJ, Huang H* (2014). Optimal Ranking in Multi-label Classification Using Local Precision Rates. <span class=SpellE><b style='mso-bidi-font-weight:normal'>Statistica</b></span><b style='mso-bidi-font-weight:normal'> <span class=SpellE>Sinica</span>.</b> <span style='font-size:11.0pt;mso-bidi-font-size:12.0pt;mso-bidi-font-family: "Times New Roman"'>24: 1547-1570.</span> [<a href="http://www3.stat.sinica.edu.tw/preprint/SS-12-331_Preprint.pdf"><span class=GramE>preprint</span> Link</a>]</li> <li class=MsoNormal style='mso-list:l2 level1 lfo3;tab-stops:list .5in'>Gerstein M, et al. (2014). Comparative Analysis of the <span class=SpellE>Transcriptome</span> across Distant Species. <b style='mso-bidi-font-weight:normal'>Nature. </b>512: 445-448. <span class=GramE>doi:10.1038</span>/nature13424. [<a href="http://www.nature.com/nature/journal/v512/n7515/full/nature13424.html">Paper Link</a>]</li> <li class=MsoNormal style='mso-list:l2 level1 lfo3;tab-stops:list .5in'>Boyle AP, et al. (2014). Comparative Analysis of Regulatory Information and Circuits across Distant Species. <b style='mso-bidi-font-weight:normal'>Nature. </b><span style='font-size:11.0pt;mso-bidi-font-size:12.0pt;mso-bidi-font-family: "Times New Roman"'>512: 453-456. <span class=GramE>doi:10.1038</span>/nature13668. [<a href="http://www.nature.com/nature/journal/v512/n7515/full/nature13668.html">Paper Link</a>]</span></li> <li class=MsoNormal style='mso-list:l2 level1 lfo3;tab-stops:list .5in'>Wang YXR, Huang H*. (2014) Review on Statistical Methods for Gene Network Reconstruction Using Expression Data. <b style='mso-bidi-font-weight:normal'>Journal of Theoretical Biology. </b>362:53-61. <span class=GramE>doi:10.1016</span>/j.jtbi.2014.03.040<b style='mso-bidi-font-weight:normal'> </b>[<a href="http://www.sciencedirect.com/science/article/pii/S0022519314001969">Paper Link</a>]</li> <li class=MsoNormal style='mso-list:l2 level1 lfo3;tab-stops:list .5in'><span class=SpellE>Xiong</span> H, Brown JB, <span class=SpellE>Boley</span> N, Bickel PJ, Huang H* (2014). DE-FPCA: Testing Gene Differential Expression and Exon Usage through Functional Principal Component Analysis. In S. <span class=SpellE>Datta</span> and D. Nettleton, editors, &quot;<b style='mso-bidi-font-weight:normal'>Statistical Analysis of <span class=GramE>Next<span style="mso-spacerun:yes">  </span>Generation</span> Sequence Data (Frontiers in Probability and Statistical Science)</b>.&quot; Springer. New York. (ISBN-13: 978-3319072111; ISBN-10: 3319072110)</li> <li class=MsoNormal style='mso-list:l2 level1 lfo3;tab-stops:list .5in'>Li JJ, Huang H, <span class=SpellE>Qian</span> M, Zhang X (2014). <span class=SpellE>Transcriptome</span> Analysis Using Next-Generation Sequencing. Chapter in  <b style='mso-bidi-font-weight:normal'>Advanced Medical Statistics</b> . 2<sup>nd</sup> Edition. To appear. (Publication Date: December 20, 2014 | ISBN-10: 9814583294 | ISBN-13: 978-9814583299) [<a href="http://www.amazon.com/Advanced-Medical-Statistics-2nd-Edition/dp/9814583294">Book Link</a>]</li> <li class=MsoNormal style='mso-list:l2 level1 lfo3;tab-stops:list .5in'>Chapman MR, <span class=SpellE>Balakrishnan</span> KR, Li J, <span class=SpellE>Conboy</span> MJ, Huang H, <span class=SpellE>Mohanty</span> SK, <span class=SpellE>Jabart</span> E, Hack J, <span class=SpellE>Conboy</span> IM, <span class=SpellE>Sohn</span> LL (2013). Sorting single satellite cells from individual <span class=SpellE>myofibers</span> reveals heterogeneity in cell-surface markers and myogenic capacity. <b style='mso-bidi-font-weight:normal'>Integrative Biology</b>. 5(4)<span class=GramE>:692</span>-702.</li> <li class=MsoNormal style='mso-list:l2 level1 lfo3;tab-stops:list .5in'>ENCODE Consortium Project (2012). An Integrated Encyclopedia of DNA Elements in the Human Genome. <b style='mso-bidi-font-weight:normal'>Nature. </b>489, 57-74.</li> <li class=MsoNormal style='mso-list:l2 level1 lfo3;tab-stops:list .5in'>Kim K, <span class=SpellE>Teng</span> S, Jiang K, Feldman L, Huang H* (2012). Using biologically interrelated experiments to identify pathway genes in <span class=SpellE>arabidopsis</span>. <b style='mso-bidi-font-weight:normal'>Bioinformatics. </b>28(6), 815-822.<b style='mso-bidi-font-weight:normal'> </b><span style='mso-fareast-font-family:‹[SO'>[<a href="http://bioinformatics.oxfordjournals.org/content/early/2012/01/23/bioinformatics.bts038.full.pdf?keytype=ref&amp;ijkey=tHKx4QDQyTzaO3T">Paper Link</a>]</span></li> <li class=MsoNormal style='mso-list:l2 level1 lfo3;tab-stops:list .5in'><span class=SpellE>Gao</span> Q, Ho C, <span class=SpellE>Jia</span> Y, Li JJ, Huang H* (2012). <span class=SpellE>Biclustering</span> of Linear Patterns in Gene Expression Data (<span class=SpellE>CLiP</span>). <b style='mso-bidi-font-weight:normal'>Journal of Computational Biology. </b>19(6), 619-631. </li> <li class=MsoNormal style='mso-list:l2 level1 lfo3;tab-stops:list .5in'>Chapman MR, <span class=SpellE>Balakrishnan</span> K, <span class=SpellE>Conboy</span> MJ, <span class=SpellE>Mohanty</span> SK, <span class=SpellE>Jabart</span> E, Li J, Huang H<span class=GramE>,<span style="mso-spacerun:yes">  </span>Hack</span> J, <span class=SpellE>Conboy</span> IM, and <span class=SpellE>Sohn</span> LL (2012). Label-free screening of niche-to-niche variation in Satellite stem cells using functionalized pores. A chapter in <span class=SpellE><b style='mso-bidi-font-weight:normal'>Nanopores</b></span><b style='mso-bidi-font-weight:normal'> for <span class=SpellE>Bioanalytical</span> Applications: Proceedings of the International Conference</b>, Eds. J. <span class=SpellE>Edel</span> and T. Albrecht, RSC Publishing, pp. 38-42. </li> <li class=MsoNormal style='mso-list:l2 level1 lfo3;tab-stops:list .5in'>Li JJ, Jiang CR, Brown BJ, Huang H*, Bickel PJ* (2011). Sparse Linear Modeling of RNA-<span class=SpellE>seq</span> Data for Isoform Discovery and Abundance Estimation. <span class=SpellE><b style='mso-bidi-font-weight:normal'>Proc</b></span><b style='mso-bidi-font-weight:normal'> <span class=SpellE>Natl</span> <span class=SpellE>Acad</span> Sci. USA</b>. 108 (50) 19867-19872. <span style='mso-fareast-font-family:‹[SO'>[<a href="http://www.pnas.org/content/early/2011/11/23/1113972108.full.pdf+html">Paper Link</a>]</span></li> <li class=MsoNormal style='mso-list:l2 level1 lfo3;tab-stops:list .5in'>Li Q, Brown JB, Huang H, Bickel PJ. (2011). Measuring Reproducibility of High-throughput Experiments. <b style='mso-bidi-font-weight:normal'>Annals of Applied Statistics.</b> 5(3), 1752-1779. <span style='mso-fareast-font-family: ‹[SO'>[<a href="http://projecteuclid.org/DPubS?service=UI&amp;version=1.0&amp;verb=Display&amp;handle=euclid.aoas/1318514284">Paper Link</a>]</span></li> <li class=MsoNormal style='mso-list:l2 level1 lfo3;tab-stops:list .5in'>Li Y, Huang H and <span class=SpellE>Cai</span> L (2011) Prediction of Transcriptional Regulatory Networks for Retinal Development. 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USA</b>. 107 (15) 6823-6828. <span style='mso-fareast-font-family:‹[SO'>[<a href="http://www.pnas.org/content/107/15/6823.full">Paper Link</a>]</span></li> </ol> <p class=MsoNormal style='margin-left:49.5pt;text-indent:-13.5pt;mso-list:l3 level2 lfo4'><![if !supportLists]><span style='font-size:9.0pt;mso-bidi-font-size:12.0pt;font-family:Symbol;mso-fareast-font-family: Symbol;mso-bidi-font-family:Symbol'><span style='mso-list:Ignore'>·<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]><i style='mso-bidi-font-style:normal'>This paper is selected for issue highlight by PNAS: http://www.pnas.org/content/107/15/6553.full.pdf+html (it is under the title &quot;Gene databases mined for diagnoses&quot;).<o:p></o:p></i></p> <p class=MsoNormal style='margin-left:49.5pt;text-indent:-13.5pt;mso-list:l3 level2 lfo4'><![if !supportLists]><span style='font-size:9.0pt;mso-bidi-font-size:12.0pt;font-family:Symbol;mso-fareast-font-family: Symbol;mso-bidi-font-family:Symbol'><span style='mso-list:Ignore'>·<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]><i style='mso-bidi-font-style:normal'>This paper has been selected for Faculty of 1000 Biology (http://www.f1000biology.com) and evaluated by Dr. Russ Altman from Stanford University: http://www.f1000biology.com/article/id/3925957.<span style="mso-spacerun:yes">  </span>(Faculty of 1000 Biology is an award-winning online service that highlights and evaluates the most interesting papers published in the biological sciences, based on the recommendations of over 2000 of the world's top researchers.)<o:p></o:p></i></p> <p class=MsoNormal style='margin-left:49.5pt;text-indent:-13.5pt;mso-list:l3 level2 lfo4'><![if !supportLists]><span style='font-size:9.0pt;mso-bidi-font-size:12.0pt;font-family:Symbol;mso-fareast-font-family: Symbol;mso-bidi-font-family:Symbol'><span style='mso-list:Ignore'>·<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]><i style='mso-bidi-font-style:normal'>This paper has also been reported in the following news reports: <o:p></o:p></i></p> <p class=MsoNormal style='margin-left:1.5in;text-indent:-.25in;mso-list:l2 level3 lfo3'><![if !supportLists]><span style='font-size:9.0pt;mso-bidi-font-size:12.0pt;font-family:Symbol;mso-fareast-font-family: Symbol;mso-bidi-font-family:Symbol'><span style='mso-list:Ignore'>·<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]><span class=SpellE><i style='mso-bidi-font-style:normal'>GenomeWeb</i></span><i style='mso-bidi-font-style:normal'> daily news.  Team Develops Proof-of-Principle Diagnostic Database for Applying Public Gene Expression Data . March 22, 2010. <o:p></o:p></i></p> <p class=MsoNormal style='margin-left:1.5in;text-indent:-.25in;mso-list:l2 level3 lfo3'><![if !supportLists]><span style='font-size:9.0pt;mso-bidi-font-size:12.0pt;font-family:Symbol;mso-fareast-font-family: Symbol;mso-bidi-font-family:Symbol'><span style='mso-list:Ignore'>·<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]><i style='mso-bidi-font-style:normal'>National Cancer Institute. Research News.  Mathematical Modeling Turns Gene Expression Data into Disease Diagnostics http://physics.cancer.gov/news/2010/april/po_news_b.asp<o:p></o:p></i></p> <p class=MsoNormal style='margin-left:1.5in;text-indent:-.25in;mso-list:l2 level3 lfo3'><![if !supportLists]><span style='font-size:9.0pt;mso-bidi-font-size:12.0pt;font-family:Symbol;mso-fareast-font-family: Symbol;mso-bidi-font-family:Symbol'><span style='mso-list:Ignore'>·<span style='font:7.0pt "Times New Roman"'>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; </span></span></span><![endif]><span class=SpellE><i style='mso-bidi-font-style:normal'>Biocentury</i></span><i style='mso-bidi-font-style:normal'> and Nature publishing group.  GEO: world of diagnostic potential, Haas, M.J. <span class=SpellE>SciBX</span> 3(14); April 8, 2010 <o:p></o:p></i></p> <ol style='margin-top:0in' start=33 type=1> <li class=MsoNormal style='mso-list:l2 level1 lfo3;tab-stops:list .5in'>Bickel PJ, <span class=SpellE>Boley</span> N, Brown JB, Huang H, Zhang NR (2010). 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The <span class=SpellE>Maize</span> Root <span class=SpellE>Stem</span> <span class=SpellE>Cell</span> <span class=SpellE>Niche</span>: A <span class=SpellE>Partnership</span> <span class=SpellE>between</span> <span class=SpellE>Two</span> Sister <span class=SpellE>Cell</span> <span class=SpellE>Populations</span>. </span><span class=SpellE><b style='mso-bidi-font-weight:normal'><span style='mso-fareast-font-family:‹[SO'>Planta</span></b></span><span style='mso-fareast-font-family:‹[SO'>, 231(2)<span class=GramE>:411</span>-24. [<a href="http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2799627/?tool=pubmed">Paper Link</a>]</span></li> <li class=MsoNormal style='mso-list:l2 level1 lfo3;tab-stops:list .5in'>Bickel P, Brown B, Huang H, Li Q (2009). 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Unsupervised clustering analysis of gene expression, <b style='mso-bidi-font-weight:normal'>Chance</b>, vol. 19, No.3.<span style='mso-fareast-font-family:‹[SO'> [<a href="http://www.ams.org/mathscinet-getitem?mr=2291284">Paper Link</a>]</span></li> <li class=MsoNormal style='mso-list:l2 level1 lfo3;tab-stops:list .5in'>Zhou XJ, Kao MJ, Huang H, Wong A, Nunez-Iglesias J, <span class=SpellE>Aparicio</span> OM, Morgan TE,<span style='mso-fareast-font-family:‹[SO'> </span>Wong WH (2005). Functional annotation and network<span style='mso-fareast-font-family: ‹[SO'> </span>reconstruction<span style='mso-fareast-font-family:‹[SO'> </span>through cross-platform integration of microarray data. <b style='mso-bidi-font-weight: normal'>Nature Biotechnology</b>, 23(2)<span class=GramE>:238</span>-43.<span style='mso-fareast-font-family:‹[SO'> [<a href="http://www.nature.com/nbt/journal/v23/n2/abs/nbt1058.html">Paper Link</a>]</span></li> <li class=MsoNormal style='mso-list:l2 level1 lfo3;tab-stops:list .5in'>Zhao X, Huang H, Speed T (2005). Finding short DNA motifs using permuted Markov models. <b style='mso-bidi-font-weight:normal'>Journal of Computational Biology</b>, 12(6): 894-906<span style='mso-fareast-font-family:‹[SO'> </span>(journal version of the 2004 RECOMB paper; numbered as 1<span style='mso-fareast-font-family: ‹[SO'>6</span> below)<span style='mso-fareast-font-family:‹[SO'> [<a href="http://www.liebertonline.com/doi/abs/10.1089/cmb.2005.12.894">Paper Link</a>]</span></li> <li class=MsoNormal style='mso-list:l2 level1 lfo3;tab-stops:list .5in'>Huang H, Kao MJ, Zhou X, Liu JS, Wong WH (2004). Determination of local statistical significance of patterns in Markov sequences with application to<span style='mso-fareast-font-family:‹[SO'> </span>promoter element identification. <b style='mso-bidi-font-weight:normal'>Journal of Computational Biology</b>, 11(1)<span class=GramE>:1</span>-14. <span style='mso-fareast-font-family:‹[SO'>[<a href="http://www.liebertonline.com/doi/abs/10.1089%2F106652704773416858">Paper Link</a>]</span></li> <li class=MsoNormal style='mso-list:l2 level1 lfo3;tab-stops:list .5in'><span class=SpellE>Cai</span> L<sup>#</sup>, Huang H<sup>#</sup>, <span class=SpellE>Blackshaw</span> S, Liu JS, <span class=SpellE>Cepko</span> CL, Wong WH (2004). Clustering<span style='mso-fareast-font-family:‹[SO'> </span>analysis of SAGE data using a Poisson approach.<span style='mso-fareast-font-family: ‹[SO'> </span><b style='mso-bidi-font-weight:normal'>Genome Biology</b>,<span style='mso-fareast-font-family:‹[SO'> </span>5(7)<span class=GramE>:R51</span><span style='mso-fareast-font-family:‹[SO'>. [<a href="http://genomebiology.com/2004/5/7/R51">Paper Link</a>]</span></li> </ol> <p class=MsoNormal style='margin-left:.25in;text-indent:.25in'><sup><span style='mso-bidi-font-family:"Times New Roman"'>#</span></sup><span style='mso-bidi-font-family:"Times New Roman"'>Joint first authors<o:p></o:p></span></p> <ol style='margin-top:0in' start=50 type=1> <li class=MsoNormal style='mso-list:l2 level1 lfo3;tab-stops:list .5in'>Zhao X, Huang H, Speed T (2004). Finding short DNA motifs using permuted Markov models. <b style='mso-bidi-font-weight:normal'>Proceedings of RECOMB</b><span style='mso-fareast-font-family:‹[SO'> 2004</span>.<span style='mso-fareast-font-family: ‹[SO'> [<a href="http://portal.acm.org/citation.cfm?doid=974614.974624">Paper Link</a>]</span></li> <li class=MsoNormal style='mso-list:l2 level1 lfo3;tab-stops:list .5in'><span class=SpellE>Blackshaw</span> S, <span class=SpellE>Harpavat</span> S, <span class=SpellE>Trimarchi</span> J, <span class=SpellE>Cai</span> L, Huang H, <span class=SpellE>Kuo</span> W, <span class=SpellE>Fraioli</span> R, Cho S, Yung<span style='mso-fareast-font-family:‹[SO'> </span>R, Asch E, Wong WH, <span class=SpellE>Cepko</span> CL (2004). Genomic analysis of<span style='mso-fareast-font-family:‹[SO'> </span>mouse retinal<span style='mso-fareast-font-family:‹[SO'> </span>development. <span class=SpellE><b style='mso-bidi-font-weight:normal'>PLoS</b></span><b style='mso-bidi-font-weight:normal'> <span class=SpellE>Biol</span></b>, 2(9)<span class=GramE>:E247</span>.<span style='mso-fareast-font-family: ‹[SO'> [<a href="http://www.plosbiology.org/article/info:doi/10.1371/journal.pbio.0020247">Paper Link</a>]</span></li> <li class=MsoNormal style='mso-list:l2 level1 lfo3;tab-stops:list .5in'><span class=SpellE>Allinen</span> M, <span class=SpellE>Beroukhim</span> R, <span class=SpellE>Cai</span> L, Brennan C, Domenici CJ, Huang H, Porter D, Hu M,<span style='mso-fareast-font-family:‹[SO'> </span>Chin L, Richardson A, <span class=SpellE>Schnitt</span> S, Sellers W, <span class=SpellE>Polyak</span> K (2004). Molecular characterization<span style='mso-fareast-font-family: ‹[SO'> </span>of the tumor microenvironment in breast cancer. <b style='mso-bidi-font-weight:normal'>Cancer Cell</b>, 6(1)<span class=GramE>:17</span>-32.<span style='mso-fareast-font-family:‹[SO'> [<a href="http://www.cell.com/cancer-cell/retrieve/pii/S1535610804001783">Paper Link</a>]</span></li> <li class=MsoNormal style='mso-list:l2 level1 lfo3;tab-stops:list .5in'><span class=SpellE>Lippert</span> RA, Huang H, Waterman MS (2002). Distributional regimes for the number<span style='mso-fareast-font-family: ‹[SO'> </span>of k-word matches between two random sequences. <span class=SpellE><b style='mso-bidi-font-weight:normal'>Proc</b></span><b style='mso-bidi-font-weight:normal'> <span class=SpellE>Natl</span> <span class=SpellE>Acad</span></b><b style='mso-bidi-font-weight:normal'><span style='mso-fareast-font-family:‹[SO'> </span>Sci.</b><b style='mso-bidi-font-weight: normal'><span style='mso-fareast-font-family:‹[SO'> </span>USA</b>,<span style='mso-fareast-font-family:‹[SO'> </span>99(22)<span class=GramE>:13980</span>-9.<span style='mso-fareast-font-family:‹[SO'> [<a href="http://www.pnas.org/content/99/22/13980">Paper Link</a>]</span></li> <li class=MsoNormal style='mso-list:l2 level1 lfo3;tab-stops:list .5in'>Huang H (2002). Error bounds on multivariate normal approximations for word count statistics. <b style='mso-bidi-font-weight:normal'>Advances in Applied Probability</b>, 34(3): 559-586<span style='mso-fareast-font-family: ‹[SO'>. [<a href="http://projecteuclid.org/DPubS?service=UI&amp;version=1.0&amp;verb=Display&amp;handle=euclid.aap/1033662166">Paper Link</a>]</span></li> </ol> <p class=MsoNormal><span style='mso-fareast-font-family:‹[SO;mso-bidi-font-family: "Times New Roman"'><o:p>&nbsp;</o:p></span></p> <h1><o:p>&nbsp;</o:p></h1> <h1>Books Edited</h1> <p class=MsoNormal><span style='mso-fareast-font-family:‹[SO;mso-bidi-font-family: "Times New Roman"'><o:p>&nbsp;</o:p></span></p> <ol style='margin-top:0in' start=55 type=1> <li class=MsoNormal style='mso-list:l2 level1 lfo3;tab-stops:list .5in'> Research in Computational Molecular Biology (11th Annual International Conference, RECOMB 2007), edited by Terry Speed and Haiyan Huang, Published by Springer.<span style='mso-fareast-font-family:‹[SO'> [<a href="http://www.books-express.co.uk/book/9783540716808/Research-in-Computational-Molecular-Biology.html">Book Link</a>]</span></li> <li class=MsoNormal style='mso-list:l2 level1 lfo3;tab-stops:list .5in'><span style='mso-fareast-font-family:‹[SO'> I<span style='mso-bidi-font-weight: bold'>naugural <span class=SpellE>DahShu</span> Data Science Symposium: Computational Precision Health (CPH 2017) ,<b> </b>edited by Haiyan Huang, <span class=SpellE>Hua</span> Tang, <span class=GramE>et</span>. <span class=GramE>al</span>.. Special Issue published by the Journal of Computational Biology.</span></span></li> </ol> <p class=MsoNormal><o:p>&nbsp;</o:p></p> <p class=Achievement style='margin-right:-18.5pt;mso-para-margin-right:-1.54gd; mso-list:none;tab-stops:list 38.1pt'><span style='font-size:11.0pt;font-family: "Times New Roman";mso-fareast-font-family:‹[SO;mso-bidi-font-family:Arial'><o:p>&nbsp;</o:p></span></p> <p class=MsoNormal><span style='mso-bidi-font-family:"Times New Roman"'><o:p>&nbsp;</o:p></span></p> <h1>Articles Submitted or Manuscripts in Preparation</h1> <p class=MsoNormal><o:p>&nbsp;</o:p></p> <ol style='margin-top:0in' start=57 type=1> <li class=MsoNormal style='mso-list:l2 level1 lfo3;tab-stops:list .5in'>Chang M, <span class=SpellE>Edmiston</span> KE, <span class=SpellE>Womer</span> FY, Zhou Q, Wei S, Jiang X, <i style='mso-bidi-font-style:normal'>Ye Y</i>, Huang H<sup>$$</sup>, <span class=SpellE>Xu</span> K, Tang Y, Wang F (2017). &nbsp;Spontaneous Low-Frequency Fluctuations in Neural System for Emotional Perception in Major Psychiatric Diagnostic Categories: Amplitude Similarities and Differences across Frequency Bands. Submitted.</li> <li class=MsoNormal style='mso-list:l2 level1 lfo3;tab-stops:list .5in'>Kang CC, Ward TM, <span class=SpellE>Bockhorn</span> J, <span class=SpellE>Schiffman</span> C, Huang H, <span class=SpellE>Pegram</span> MD and Herr AE (2017). <span style='mso-bidi-font-weight:bold'>Clinical Electrophoretic Pathology Investigates <span class=SpellE>Oncoprotein</span> Isoforms.</span> Submitted to NPJ (Nature Partnering Journal) Precision Oncology.</li> <li class=MsoNormal style='mso-list:l2 level1 lfo3;tab-stops:list .5in'>Liu K<i style='mso-bidi-font-style:normal'>,</i> <span class=GramE>et</span>. <span class=GramE>al</span>. (2017) Bagged semi-supervised gene clustering for context-specific gene pathway analysis.<span style="mso-spacerun:yes">  </span></li> <li class=MsoNormal style='mso-list:l2 level1 lfo3;tab-stops:list .5in'>Ho C, Jiang CR, Lee W<i style='mso-bidi-font-style:normal'>,</i> Huang H* (2017). Optimal decision making in hierarchical multi-label classification. </li> <li class=MsoNormal style='mso-list:l2 level1 lfo3;tab-stops:list .5in'><span class=SpellE>Ren</span> H, Qi<span style='mso-bidi-font-weight:bold'> </span>C, Ma Q, Sun X, Wei Q, Liang JW, Li G, Zhang Z, <span class=SpellE>Ren</span> J, Yan J, Li G<span class=GramE>,<span style="mso-spacerun:yes">   </span><span class=SpellE>Xu</span></span> W, Li X, <span class=SpellE>Bai</span> C, She X, Wu G<span style='mso-bidi-font-weight:bold'>, </span>Huang H and McCormick S (2017). <span style='mso-bidi-font-weight:bold'>Fixation of expression divergences by natural selection in <i>Arabidopsis </i>coding genes. </span></li> </ol> <p class=MsoNormal style='margin-left:.25in'><o:p>&nbsp;</o:p></p> <p class=MsoNormal style='margin-left:.5in'><o:p>&nbsp;</o:p></p> <p class=MsoNormal><span style='mso-fareast-font-family:‹[SO;mso-bidi-font-family: "Times New Roman"'><o:p>&nbsp;</o:p></span></p> </div> </body> </html>