Output from DE Analyses, BT642Year1

Output from DE Analyses

The following are documents created during doing the different differential exprssion analyses (and thus also show/document the code).

• Water change analysis: Analysis of the differences directly around water transitions
• Per timepoint analysis: Analysis of Week-by-week changes of drought and control
• Global Leaf, Preflowering (“split splines”) analysis
• Global Leaf, Postflowering (“split splines”) analysis
• Global Root, Preflowering (“split splines”) analysis
• Global Root, Postflowering (“split splines”) analysis
• Calculate Effects, Leaf
• Calculate Effects, Root

Output from extracting gene sets for reports

The following are documents created when extracting sets of genes for the reports

• Global DE:
  • Leaf, Preflowering, RT430
  • Leaf, Preflowering, BT642
  • Leaf, Postflowering, RT430
  • Leaf, Postflowering, BT642
  • Root, Preflowering, RT430
  • Root, Preflowering, BT642
  • Root, Postflowering, RT430
  • Root, Postflowering, BT642
• Global DE, comparing conditions:
  • Leaf
  • Root
• Global DE, Genotype differences:
  • Leaf, Preflowering, All Genes
  • Leaf, Preflowering, By Drought Tps
  • Leaf, Postflowering, All Genes
  • Leaf, Postflowering, By Drought Tps
  • Root, Preflowering, All Genes
  • Root, Preflowering, By Drought Tps
  • Root, Postflowering, All Genes
  • Root, Postflowering, By Drought Tps
• DE_jumps
  • Leaf, Preflowering
  • Root, Preflowering
  • Leaf, Postflowering
  • Root, Postflowering
• DE_jumps, comparing conditions
  • Leaf
  • Root
• Combined DE, comparing conditions:
  • Leaf
  • Root
• DE Timepoints