Speed Group 
Microarray Page

Index to our site

Research

Affy

Papers/Tech. reports

Talks/Posters

Hints/Prejudices

Group Members

Support

Collaborators

Software

Links

Home - Papers and technical  reportsApo AI data
 

ApoA1 Data 
 

  •  Background corrected Cy3 and Cy5 fluorescence intensities for all 16 hybridizations.

  • The scanned images were processed using the software Spot. Segmentation was performed using the seeded region growing algorithm and background intensities were estimated by morphological opening. The first 8 pairs of columns (cjG,cjR) correspond to the Cy3 and Cy5 intensities for the 8 control mice; the last 8 pairs of columns (kjG,kjR) correspond to the Cy3 and Cy5 intensities for the 8 knock-out mice.
     
  • Gene names and position on the slide.

  •  
  • Scanned images.

  •  

     
     
     

    N.B. 

    1. Not all clones have been sequence verified. 
    2. The 8 clones identified in the paper have been sequence verified and their identity checked. Their row numbers in the data matrix are 2149, 4139, 5356, 1739, 540, 1496, 2537, 4941.

     
     
     

    To top

    Last modified: Fri Apr 6 10:18:45 PDT 2001
    zarray@stat.berkeley.edu



      contact Terry Speed's
    microarray data analysis group